IL_8K82_030

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K82_030 not in the Motif Atlas

Homologous match to IL_8C3A_033

Geometric discrepancy: 0.0788

The information below is about IL_8C3A_033

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

8K82|1|C1|U|834
8K82|1|C1|G|835
8K82|1|C1|A|836
8K82|1|C1|A|837
8K82|1|C1|G|838
*
8K82|1|C1|U|855
8K82|1|C1|G|856
8K82|1|C1|G|857
8K82|1|C1|A|858
8K82|1|C1|G|859

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LA

Large ribosomal subunit protein uL2A

Chain LR

Large ribosomal subunit protein eL19A

Chain Lp

Large ribosomal subunit protein eL43A