IL_8K82_074
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UUAUCA*UCUUAUG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K82_074 not in the Motif Atlas
- Homologous match to IL_5TBW_072
- Geometric discrepancy: 0.1064
- The information below is about IL_5TBW_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_39753.2
- Basepair signature
- cWW-L-R-tWH-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8K82|1|C1|U|1702
8K82|1|C1|U|1703
8K82|1|C1|A|1704
8K82|1|C1|U|1705
8K82|1|C1|C|1706
8K82|1|C1|A|1707
*
8K82|1|C1|U|1737
8K82|1|C1|C|1738
8K82|1|C1|U|1739
8K82|1|C1|U|1740
8K82|1|C1|A|1741
8K82|1|C1|U|1742
8K82|1|C1|G|1743
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain Lg
- Large ribosomal subunit protein eL34A
- Chain Lp
- Large ribosomal subunit protein eL43A
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