IL_8K82_079

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

8K82|1|C1|G|2335

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K82_079 not in the Motif Atlas

Homologous match to IL_8C3A_083

Geometric discrepancy: 0.0684

The information below is about IL_8C3A_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

8K82|1|C1|A|1901
8K82|1|C1|G|1902
8K82|1|C1|U|1903
8K82|1|C1|C|1904
8K82|1|C1|G|1905
8K82|1|C1|G|1906
*
8K82|1|C1|C|2333
8K82|1|C1|U|2334
8K82|1|C1|G|2335
8K82|1|C1|U|2336

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LV

Large ribosomal subunit protein uL14A