IL_8K82_084

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAUGG*UGUUGACG

Length

14 nucleotides

Bulged bases

8K82|1|C1|U|2159, 8K82|1|C1|U|2175, 8K82|1|C1|C|2179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K82_084 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.09

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

8K82|1|C1|C|2156
8K82|1|C1|G|2157
8K82|1|C1|A|2158
8K82|1|C1|U|2159
8K82|1|C1|G|2160
8K82|1|C1|G|2161
*
8K82|1|C1|U|2173
8K82|1|C1|G|2174
8K82|1|C1|U|2175
8K82|1|C1|U|2176
8K82|1|C1|G|2177
8K82|1|C1|A|2178
8K82|1|C1|C|2179
8K82|1|C1|G|2180

Current chains

Chain C1

23S rRNA

Nearby chains

Chain C2

Small subunit ribosomal RNA; SSU rRNA

Chain LA

Large ribosomal subunit protein uL2A

Chain Lp

Large ribosomal subunit protein eL43A