IL_8K82_088

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

8K82|1|C1|A|2207

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K82_088 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.3804

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8K82|1|C1|G|2206
8K82|1|C1|A|2207
8K82|1|C1|A|2208
8K82|1|C1|U|2209
8K82|1|C1|G|2210
*
8K82|1|C1|C|2235
8K82|1|C1|G|2236
8K82|1|C1|C|2237

Current chains

Chain C1

23S rRNA

Nearby chains

Chain C2

Small subunit ribosomal RNA; SSU rRNA

Chain CN

General negative regulator of transcription subunit 5

Chain LA

Large ribosomal subunit protein uL2A