IL_8K82_089

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K82_089 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.0722

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8K82|1|C1|U|2211
8K82|1|C1|C|2212
8K82|1|C1|A|2213
8K82|1|C1|A|2214
8K82|1|C1|A|2215
8K82|1|C1|G|2216
8K82|1|C1|U|2217
*
8K82|1|C1|A|2228
8K82|1|C1|A|2229
8K82|1|C1|C|2230
8K82|1|C1|C|2231
8K82|1|C1|A|2232
8K82|1|C1|A|2233
8K82|1|C1|G|2234

Current chains

Chain C1

23S rRNA

Nearby chains

Chain Li

Large ribosomal subunit protein eL36A

Chain Lo

Large ribosomal subunit protein eL42A