IL_8K82_092

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCGG*UAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K82_092 not in the Motif Atlas

Homologous match to IL_8C3A_096

Geometric discrepancy: 0.0834

The information below is about IL_8C3A_096

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_63450.5

Basepair signature

cWW-cHS-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8K82|1|C1|G|2391
8K82|1|C1|C|2392
8K82|1|C1|G|2393
8K82|1|C1|G|2394
*
8K82|1|C1|U|2986
8K82|1|C1|A|2987
8K82|1|C1|C|2988

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LO

Large ribosomal subunit protein uL13A

Chain LP

Large ribosomal subunit protein uL22A