IL_8K82_149
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UAUAAG*UGAAA
- Length
- 11 nucleotides
- Bulged bases
- 8K82|1|C2|U|66, 8K82|1|C2|A|68
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K82_149 not in the Motif Atlas
- Homologous match to IL_4V88_390
- Geometric discrepancy: 0.1176
- The information below is about IL_4V88_390
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_87517.1
- Basepair signature
- cWW-L-R-L-R-tHS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8K82|1|C2|U|64
8K82|1|C2|A|65
8K82|1|C2|U|66
8K82|1|C2|A|67
8K82|1|C2|A|68
8K82|1|C2|G|69
*
8K82|1|C2|U|82
8K82|1|C2|G|83
8K82|1|C2|A|84
8K82|1|C2|A|85
8K82|1|C2|A|86
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain SG
- 40S ribosomal protein S6-A
- Chain SY
- 40S ribosomal protein S24-A
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