IL_8K82_176

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K82_176 not in the Motif Atlas

Homologous match to IL_8C3A_423

Geometric discrepancy: 0.0916

The information below is about IL_8C3A_423

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.2

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

8K82|1|C2|A|550
8K82|1|C2|G|551
8K82|1|C2|G|552
8K82|1|C2|G|553
8K82|1|C2|C|554
8K82|1|C2|A|555
8K82|1|C2|A|556
8K82|1|C2|G|557
*
8K82|1|C2|C|587
8K82|1|C2|U|588

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SC

40S ribosomal protein S2

Chain SJ

40S ribosomal protein S9-A

Chain Se

40S ribosomal protein S30-A