IL_8K82_188

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUC*GGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K82_188 not in the Motif Atlas

Homologous match to IL_8C3A_435

Geometric discrepancy: 0.2139

The information below is about IL_8C3A_435

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

8K82|1|C2|U|825
8K82|1|C2|U|826
8K82|1|C2|C|827
*
8K82|1|C2|G|845
8K82|1|C2|G|846
8K82|1|C2|A|847

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SL

Small ribosomal subunit protein uS17A