IL_8K82_193
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUAU*AGAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K82_193 not in the Motif Atlas
- Homologous match to IL_8C3A_439
- Geometric discrepancy: 0.0635
- The information below is about IL_8C3A_439
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_54697.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 51
Unit IDs
8K82|1|C2|G|885
8K82|1|C2|U|886
8K82|1|C2|A|887
8K82|1|C2|U|888
*
8K82|1|C2|A|924
8K82|1|C2|G|925
8K82|1|C2|A|926
8K82|1|C2|C|927
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain LA
- Large ribosomal subunit protein uL2A
- Chain SB
- 40S ribosomal protein S1-A
- Chain SO
- 40S ribosomal protein S14-A
- Chain Sa
- Small ribosomal subunit protein eS26B
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