IL_8K82_211

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8K82|1|C2|U|1269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K82_211 not in the Motif Atlas

Homologous match to IL_8C3A_455

Geometric discrepancy: 0.095

The information below is about IL_8C3A_455

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

94

Unit IDs

8K82|1|C2|G|1268
8K82|1|C2|U|1269
8K82|1|C2|G|1270
*
8K82|1|C2|C|1440
8K82|1|C2|C|1441

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SK

Small ribosomal subunit protein eS10A

Chain Sd

Small ribosomal subunit protein uS14A