IL_8K82_226
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GCCC*GUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K82_226 not in the Motif Atlas
- Homologous match to IL_8C3A_471
- Geometric discrepancy: 0.0665
- The information below is about IL_8C3A_471
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65718.2
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8K82|1|C2|G|1638
8K82|1|C2|C|1639
8K82|1|C2|C|1640
8K82|1|C2|C|1641
*
8K82|1|C2|G|1760
8K82|1|C2|U|1761
8K82|1|C2|A|1762
8K82|1|C2|A|1763
8K82|1|C2|C|1764
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain C1
- Large subunit ribosomal RNA; LSU rRNA
- Chain C5
- Transfer RNA; tRNA
- Chain C7
- mRNA
- Chain Ln
- Large ribosomal subunit protein eL41A
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