IL_8K82_228
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- 8K82|1|C2|A|1756
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K82_228 not in the Motif Atlas
- Geometric match to IL_3WBM_002
- Geometric discrepancy: 0.3204
- The information below is about IL_3WBM_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
8K82|1|C2|C|1644
8K82|1|C2|G|1645
8K82|1|C2|C|1646
8K82|1|C2|U|1647
*
8K82|1|C2|A|1753
8K82|1|C2|A|1754
8K82|1|C2|A|1755
8K82|1|C2|A|1756
8K82|1|C2|G|1757
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain C1
- Large subunit ribosomal RNA; LSU rRNA
- Chain Ln
- Large ribosomal subunit protein eL41A
- Chain SX
- 40S ribosomal protein S23-A
- Chain Se
- 40S ribosomal protein S30-A
Coloring options: