IL_8K82_247
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- ACCGAGUAG*CGAAACU
- Length
- 16 nucleotides
- Bulged bases
- 8K82|1|C4|C|73
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8K82_247 not in the Motif Atlas
- Homologous match to IL_5TBW_377
- Geometric discrepancy: 0.0744
- The information below is about IL_5TBW_377
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8K82|1|C4|A|72
8K82|1|C4|C|73
8K82|1|C4|C|74
8K82|1|C4|G|75
8K82|1|C4|A|76
8K82|1|C4|G|77
8K82|1|C4|U|78
8K82|1|C4|A|79
8K82|1|C4|G|80
*
8K82|1|C4|C|100
8K82|1|C4|G|101
8K82|1|C4|A|102
8K82|1|C4|A|103
8K82|1|C4|A|104
8K82|1|C4|C|105
8K82|1|C4|U|106
Current chains
- Chain C4
- 5S rRNA
Nearby chains
- Chain C1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LF
- Large ribosomal subunit protein uL30A
- Chain LI
- Large ribosomal subunit protein uL16
- Chain LS
- Large ribosomal subunit protein eL20A
- Chain LT
- Large ribosomal subunit protein eL21A
Coloring options: