IL_8K82_264

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GG*UUUC

Length

6 nucleotides

Bulged bases

8K82|1|C1|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8K82_264 not in the Motif Atlas

Homologous match to IL_8P9A_293

Geometric discrepancy: 0.3188

The information below is about IL_8P9A_293

Detailed Annotation

Major groove platform related

Broad Annotation

Major groove platform related

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

8K82|1|C1|G|1623
8K82|1|C1|G|1624
*
8K82|1|C1|U|1819
8K82|1|C1|U|1820
8K82|1|C1|U|1821
8K82|1|C1|C|1822

Current chains

Chain C1

23S rRNA

Nearby chains

Chain L2

Large ribosomal subunit protein eL41A

Chain Lg

Large ribosomal subunit protein eL34A

Chain Lk

Large ribosomal subunit protein eL38