IL_8KAJ_001

3D structure

PDB id

8KAJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of SpyCas9-crRNA-tracrRNA complex bound to 16nt target DNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

UUA*UAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UUA,UAA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8KAJ_001 not in the Motif Atlas

Geometric match to IL_4KR9_001

Geometric discrepancy: 0.197

The information below is about IL_4KR9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

8KAJ|1|A|U|24
8KAJ|1|A|U|25
8KAJ|1|A|A|26
*
8KAJ|1|I|U|45
8KAJ|1|I|A|46
8KAJ|1|I|A|47

Current chains

Chain A

RNA (34-MER)

Chain I

RNA (65-MER)

Nearby chains

Chain B

CRISPR-associated endonuclease Cas9/Csn1