IL_8KAJ_002
3D structure
- PDB id
- 8KAJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of SpyCas9-crRNA-tracrRNA complex bound to 16nt target DNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.42 Å
Loop
- Sequence
- AGAG*CAAGUU
- Length
- 10 nucleotides
- Bulged bases
- 8KAJ|1|A|A|28, 8KAJ|1|I|U|44
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_82683.2
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 11
Unit IDs
8KAJ|1|A|A|26
8KAJ|1|A|G|27
8KAJ|1|A|A|28
8KAJ|1|A|G|29
*
8KAJ|1|I|C|40
8KAJ|1|I|A|41
8KAJ|1|I|A|42
8KAJ|1|I|G|43
8KAJ|1|I|U|44
8KAJ|1|I|U|45
Current chains
- Chain A
- RNA (34-MER)
- Chain I
- RNA (65-MER)
Nearby chains
- Chain B
- CRISPR-associated endonuclease Cas9/Csn1
Coloring options: