IL_8KAL_004
3D structure
- PDB id
- 8KAL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of SpyCas9 in complex with sgRNA and 17nt target DNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.16 Å
Loop
- Sequence
- AGAGC*GCAAGUU
- Length
- 12 nucleotides
- Bulged bases
- 8KAL|1|E|A|28, 8KAL|1|E|U|44
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8KAL_004 not in the Motif Atlas
- Homologous match to IL_8KAL_002
- Geometric discrepancy: 0.1046
- The information below is about IL_8KAL_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_84029.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
8KAL|1|E|A|26
8KAL|1|E|G|27
8KAL|1|E|A|28
8KAL|1|E|G|29
8KAL|1|E|C|30
*
8KAL|1|E|G|39
8KAL|1|E|C|40
8KAL|1|E|A|41
8KAL|1|E|A|42
8KAL|1|E|G|43
8KAL|1|E|U|44
8KAL|1|E|U|45
Current chains
- Chain E
- RNA (98-MER)
Nearby chains
- Chain G
- CRISPR-associated endonuclease Cas9/Csn1
Coloring options: