IL_8KIE_004
3D structure
- PDB id
- 8KIE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of YchF with 50S ribosomal subunit (local map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GGAA*UC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8KIE_004 not in the Motif Atlas
- Homologous match to IL_8VTW_065
- Geometric discrepancy: 0.0472
- The information below is about IL_8VTW_065
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_50694.4
- Basepair signature
- cWW-cWW-tSH-cWW-R
- Number of instances in this motif group
- 28
Unit IDs
8KIE|1|a|G|1787
8KIE|1|a|G|1788
8KIE|1|a|A|1789
8KIE|1|a|A|1790
*
8KIE|1|a|U|2114
8KIE|1|a|C|2115
Current chains
- Chain a
- 23S rRNA (partial)
Nearby chains
- Chain j
- 50S ribosomal protein L14
Coloring options: