3D structure

PDB id
8KIE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of YchF with 50S ribosomal subunit (local map)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.5 Å

Loop

Sequence
GGAA*UC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8KIE_004 not in the Motif Atlas
Homologous match to IL_8VTW_065
Geometric discrepancy: 0.0472
The information below is about IL_8VTW_065
Detailed Annotation
Major groove platform; stack outside cWW
Broad Annotation
No text annotation
Motif group
IL_50694.4
Basepair signature
cWW-cWW-tSH-cWW-R
Number of instances in this motif group
28

Unit IDs

8KIE|1|a|G|1787
8KIE|1|a|G|1788
8KIE|1|a|A|1789
8KIE|1|a|A|1790
*
8KIE|1|a|U|2114
8KIE|1|a|C|2115

Current chains

Chain a
23S rRNA (partial)

Nearby chains

Chain j
50S ribosomal protein L14

Coloring options:


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