IL_8KIE_005
3D structure
- PDB id
- 8KIE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of YchF with 50S ribosomal subunit (local map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- ACUAGG*CUGU
- Length
- 10 nucleotides
- Bulged bases
- 8KIE|1|a|G|2113
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8KIE_005 not in the Motif Atlas
- Geometric match to IL_5J7L_307
- Geometric discrepancy: 0.0653
- The information below is about IL_5J7L_307
- Detailed Annotation
- Intercalated tWH
- Broad Annotation
- Intercalated tWH
- Motif group
- IL_76758.2
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 7
Unit IDs
8KIE|1|a|A|1790
8KIE|1|a|C|1791
8KIE|1|a|U|1792
8KIE|1|a|A|1793
8KIE|1|a|G|1794
8KIE|1|a|G|1795
*
8KIE|1|a|C|2111
8KIE|1|a|U|2112
8KIE|1|a|G|2113
8KIE|1|a|U|2114
Current chains
- Chain a
- 23S rRNA (partial)
Nearby chains
- Chain j
- 50S ribosomal protein L14
Coloring options: