IL_8KIE_006

3D structure

PDB id

8KIE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of YchF with 50S ribosomal subunit (local map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

8KIE|1|a|G|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8KIE_006 not in the Motif Atlas

Homologous match to IL_8VTW_067

Geometric discrepancy: 0.0901

The information below is about IL_8VTW_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8KIE|1|a|C|1807
8KIE|1|a|G|1808
8KIE|1|a|U|1809
8KIE|1|a|A|1810
8KIE|1|a|A|1811
8KIE|1|a|C|1812
*
8KIE|1|a|G|1817
8KIE|1|a|G|1818
8KIE|1|a|A|1819
8KIE|1|a|G|1820
8KIE|1|a|A|1821
8KIE|1|a|A|1822
8KIE|1|a|G|1823

Current chains

Chain a

23S rRNA (partial)

Nearby chains

Chain y

Ribosome-binding ATPase YchF