IL_8KIE_007

3D structure

PDB id

8KIE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of YchF with 50S ribosomal subunit (local map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

8KIE|1|a|U|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8KIE_007 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.1118

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8KIE|1|a|U|1833
8KIE|1|a|A|1834
8KIE|1|a|U|1835
8KIE|1|a|G|1836
8KIE|1|a|U|1837
8KIE|1|a|A|1838
8KIE|1|a|G|1839
*
8KIE|1|a|U|1863
8KIE|1|a|G|1864
8KIE|1|a|A|1865
8KIE|1|a|A|1866
8KIE|1|a|A|1867

Current chains

Chain a

23S rRNA (partial)

Nearby chains