IL_8KIE_010

3D structure

PDB id

8KIE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of YchF with 50S ribosomal subunit (local map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GC*GAU

Length

5 nucleotides

Bulged bases

8KIE|1|a|A|2102

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8KIE_010 not in the Motif Atlas

Homologous match to IL_7A0S_064

Geometric discrepancy: 0.0969

The information below is about IL_7A0S_064

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

8KIE|1|a|G|1891
8KIE|1|a|C|1892
*
8KIE|1|a|G|2101
8KIE|1|a|A|2102
8KIE|1|a|U|2103

Current chains

Chain a

23S rRNA (partial)

Nearby chains