IL_8KIE_015

3D structure

PDB id

8KIE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of YchF with 50S ribosomal subunit (local map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGUG*CUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8KIE_015 not in the Motif Atlas

Homologous match to IL_5J7L_353

Geometric discrepancy: 0.0739

The information below is about IL_5J7L_353

Detailed Annotation

Multiple bulged bases with non-canonical cWW

Broad Annotation

Multiple bulged bases with non-canonical cWW

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

8KIE|1|a|G|2964
8KIE|1|a|G|2965
8KIE|1|a|U|2966
8KIE|1|a|G|2967
*
8KIE|1|a|C|2991
8KIE|1|a|U|2992
8KIE|1|a|A|2993
8KIE|1|a|A|2994
8KIE|1|a|C|2995

Current chains

Chain a

23S rRNA (partial)

Nearby chains

Chain o

50S ribosomal protein L19