IL_8KIE_016

3D structure

PDB id

8KIE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of YchF with 50S ribosomal subunit (local map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8KIE_016 not in the Motif Atlas

Homologous match to IL_5J7L_354

Geometric discrepancy: 0.074

The information below is about IL_5J7L_354

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_70411.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

8KIE|1|a|U|2968
8KIE|1|a|G|2969
8KIE|1|a|U|2970
8KIE|1|a|A|2971
8KIE|1|a|A|2972
8KIE|1|a|G|2973
*
8KIE|1|a|U|2986
8KIE|1|a|U|2987
8KIE|1|a|G|2988
8KIE|1|a|A|2989
8KIE|1|a|G|2990

Current chains

Chain a

23S rRNA (partial)

Nearby chains

Chain o

50S ribosomal protein L19