IL_8OEQ_021
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GAAUGUGG*UGUUAUAGC
- Length
- 17 nucleotides
- Bulged bases
- 8OEQ|1|1|U|530, 8OEQ|1|1|U|556
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OEQ_021 not in the Motif Atlas
- Homologous match to IL_8C3A_022
- Geometric discrepancy: 0.0447
- The information below is about IL_8C3A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_07703.1
- Basepair signature
- cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8OEQ|1|1|G|527
8OEQ|1|1|A|528
8OEQ|1|1|A|529
8OEQ|1|1|U|530
8OEQ|1|1|G|531
8OEQ|1|1|U|532
8OEQ|1|1|G|533
8OEQ|1|1|G|534
*
8OEQ|1|1|U|551
8OEQ|1|1|G|552
8OEQ|1|1|U|553
8OEQ|1|1|U|554
8OEQ|1|1|A|555
8OEQ|1|1|U|556
8OEQ|1|1|A|557
8OEQ|1|1|G|558
8OEQ|1|1|C|559
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 0
- 60S ribosomal protein L20
- Chain u
- 60S ribosomal protein L14-B
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