IL_8OEQ_029
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 8OEQ|1|1|A|929, 8OEQ|1|1|G|933
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OEQ_029 not in the Motif Atlas
- Homologous match to IL_8C3A_030
- Geometric discrepancy: 0.0424
- The information below is about IL_8C3A_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
8OEQ|1|1|G|801
8OEQ|1|1|A|802
8OEQ|1|1|A|803
8OEQ|1|1|A|804
8OEQ|1|1|G|805
*
8OEQ|1|1|C|927
8OEQ|1|1|U|928
8OEQ|1|1|A|929
8OEQ|1|1|G|930
8OEQ|1|1|U|931
8OEQ|1|1|A|932
8OEQ|1|1|G|933
8OEQ|1|1|C|934
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain AB
- 60S ribosomal protein L28
- Chain AK
- 60S ribosomal protein L37-B
- Chain l
- 60S ribosomal protein L4-B
- Chain t
- 60S ribosomal protein L13
- Chain v
- 60S ribosomal protein L15-A
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