IL_8OEQ_032
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UGAAG*UGGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OEQ_032 not in the Motif Atlas
- Homologous match to IL_8C3A_033
- Geometric discrepancy: 0.0411
- The information below is about IL_8C3A_033
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_95716.2
- Basepair signature
- cWW-cWW-tHS-tHS-tSH-cWW
- Number of instances in this motif group
- 18
Unit IDs
8OEQ|1|1|U|830
8OEQ|1|1|G|831
8OEQ|1|1|A|832
8OEQ|1|1|A|833
8OEQ|1|1|G|834
*
8OEQ|1|1|U|851
8OEQ|1|1|G|852
8OEQ|1|1|G|853
8OEQ|1|1|A|854
8OEQ|1|1|G|855
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain AQ
- 60S ribosomal protein L43-A
- Chain j
- 60S ribosomal protein L2-B
- Chain z
- 60S ribosomal protein L19-A
Coloring options: