IL_8OEQ_035
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GGG*UAAUC
- Length
- 8 nucleotides
- Bulged bases
- 8OEQ|1|1|G|904, 8OEQ|1|1|A|916, 8OEQ|1|1|A|917, 8OEQ|1|1|U|918
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OEQ_035 not in the Motif Atlas
- Homologous match to IL_8C3A_036
- Geometric discrepancy: 0.0488
- The information below is about IL_8C3A_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.8
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8OEQ|1|1|G|903
8OEQ|1|1|G|904
8OEQ|1|1|G|905
*
8OEQ|1|1|U|915
8OEQ|1|1|A|916
8OEQ|1|1|A|917
8OEQ|1|1|U|918
8OEQ|1|1|C|919
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain AK
- 60S ribosomal protein L37-B
- Chain j
- 60S ribosomal protein L2-B
- Chain v
- 60S ribosomal protein L15-A
- Chain x
- Ribosomal protein L22
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