IL_8OEQ_059
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- AUUG*CUUU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OEQ_059 not in the Motif Atlas
- Homologous match to IL_8C3A_060
- Geometric discrepancy: 0.0439
- The information below is about IL_8C3A_060
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
8OEQ|1|1|A|1339
8OEQ|1|1|U|1340
8OEQ|1|1|U|1341
8OEQ|1|1|G|1342
*
8OEQ|1|1|C|1354
8OEQ|1|1|U|1355
8OEQ|1|1|U|1356
8OEQ|1|1|U|1357
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain AF
- 60S ribosomal protein L32
- Chain l
- 60S ribosomal protein L4-B
- Chain n
- 60S ribosomal protein L6
- Chain o
- 60S ribosomal protein L7-A
- Chain y
- 60S ribosomal protein L18-A
Coloring options: