IL_8OEQ_062
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UGACGAAG*UCGAA
- Length
- 13 nucleotides
- Bulged bases
- 8OEQ|1|1|C|1387
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OEQ_062 not in the Motif Atlas
- Homologous match to IL_8C3A_063
- Geometric discrepancy: 0.0327
- The information below is about IL_8C3A_063
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.5
- Basepair signature
- cWW-cWW-tSS-tSH-tHS-cWW-tHS
- Number of instances in this motif group
- 32
Unit IDs
8OEQ|1|1|U|1384
8OEQ|1|1|G|1385
8OEQ|1|1|A|1386
8OEQ|1|1|C|1387
8OEQ|1|1|G|1388
8OEQ|1|1|A|1389
8OEQ|1|1|A|1390
8OEQ|1|1|G|1391
*
8OEQ|1|1|U|1411
8OEQ|1|1|C|1412
8OEQ|1|1|G|1413
8OEQ|1|1|A|1414
8OEQ|1|1|A|1415
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain 9
- Ribosomal protein L24
- Chain AF
- 60S ribosomal protein L32
- Chain l
- 60S ribosomal protein L4-B
- Chain x
- Ribosomal protein L22
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