IL_8OEQ_077
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UGGAAUU*GGAGAUG
- Length
- 14 nucleotides
- Bulged bases
- 8OEQ|1|1|U|1712, 8OEQ|1|1|A|1725
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OEQ_077 not in the Motif Atlas
- Homologous match to IL_8C3A_079
- Geometric discrepancy: 0.044
- The information below is about IL_8C3A_079
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60192.2
- Basepair signature
- cWW-tSH-tSH-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
8OEQ|1|1|U|1707
8OEQ|1|1|G|1708
8OEQ|1|1|G|1709
8OEQ|1|1|A|1710
8OEQ|1|1|A|1711
8OEQ|1|1|U|1712
8OEQ|1|1|U|1713
*
8OEQ|1|1|G|1723
8OEQ|1|1|G|1724
8OEQ|1|1|A|1725
8OEQ|1|1|G|1726
8OEQ|1|1|A|1727
8OEQ|1|1|U|1728
8OEQ|1|1|G|1729
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain AA
- 60S ribosomal protein L27
- Chain AD
- 60S ribosomal protein L30
- Chain AH
- 60S ribosomal protein L34-B
- Chain AQ
- 60S ribosomal protein L43-A
- Chain P
- 40S ribosomal protein S13
- Chain z
- 60S ribosomal protein L19-A
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