IL_8OEQ_100

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAUGG*UAUAG

Length

10 nucleotides

Bulged bases

8OEQ|1|1|A|2480

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OEQ_100 not in the Motif Atlas

Homologous match to IL_8C3A_102

Geometric discrepancy: 0.0357

The information below is about IL_8C3A_102

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90170.1

Basepair signature

cWW-L-R-L-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8OEQ|1|1|C|2422
8OEQ|1|1|A|2423
8OEQ|1|1|U|2424
8OEQ|1|1|G|2425
8OEQ|1|1|G|2426
*
8OEQ|1|1|U|2477
8OEQ|1|1|A|2478
8OEQ|1|1|U|2479
8OEQ|1|1|A|2480
8OEQ|1|1|G|2481

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AJ

60S ribosomal protein L36

Chain l1

Ribosomal protein