IL_8OEQ_133

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUUA*UUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OEQ_133 not in the Motif Atlas

Homologous match to IL_8C3A_134

Geometric discrepancy: 0.0999

The information below is about IL_8C3A_134

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8OEQ|1|1|C|3200
8OEQ|1|1|U|3201
8OEQ|1|1|U|3202
8OEQ|1|1|A|3203
*
8OEQ|1|1|U|3214
8OEQ|1|1|U|3215
8OEQ|1|1|U|3216
8OEQ|1|1|G|3217

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain w

Ribosomal protein L13