IL_8OEQ_138
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UGUAAG*CUGAG
- Length
- 11 nucleotides
- Bulged bases
- 8OEQ|1|1|G|3334
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OEQ_138 not in the Motif Atlas
- Homologous match to IL_8C3A_139
- Geometric discrepancy: 0.0765
- The information below is about IL_8C3A_139
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_83162.8
- Basepair signature
- cWW-cWW-tSH-cWW-tHH-L
- Number of instances in this motif group
- 4
Unit IDs
8OEQ|1|1|U|3297
8OEQ|1|1|G|3298
8OEQ|1|1|U|3299
8OEQ|1|1|A|3300
8OEQ|1|1|A|3301
8OEQ|1|1|G|3302
*
8OEQ|1|1|C|3332
8OEQ|1|1|U|3333
8OEQ|1|1|G|3334
8OEQ|1|1|A|3335
8OEQ|1|1|G|3336
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 7
- 60S ribosomal protein L24-A
- Chain k
- 60S ribosomal protein L3
Coloring options: