IL_8OEQ_140

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OEQ_140 not in the Motif Atlas

Homologous match to IL_8C3A_141

Geometric discrepancy: 0.0473

The information below is about IL_8C3A_141

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

8OEQ|1|1|A|3307
8OEQ|1|1|G|3308
8OEQ|1|1|A|3309
8OEQ|1|1|G|3310
*
8OEQ|1|1|C|3325
8OEQ|1|1|G|3326
8OEQ|1|1|A|3327
8OEQ|1|1|U|3328

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain K

40S ribosomal protein S8

Chain z

60S ribosomal protein L19-A