IL_8OEQ_158

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUAUC*GUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OEQ_158 not in the Motif Atlas

Homologous match to IL_8C3A_009

Geometric discrepancy: 0.1414

The information below is about IL_8C3A_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90170.1

Basepair signature

cWW-L-R-L-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8OEQ|1|AS|G|161
8OEQ|1|AS|U|162
8OEQ|1|AS|A|163
8OEQ|1|AS|U|164
8OEQ|1|AS|C|165
*
8OEQ|1|AS|G|256
8OEQ|1|AS|U|257
8OEQ|1|AS|U|258
8OEQ|1|AS|C|259

Current chains

Chain AS

25S ribosomal RNA

Nearby chains

Chain BG

60S ribosomal protein L13

Chain CC

Ribosomal protein L29