IL_8OEQ_192

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AUUA*UUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OEQ_192 not in the Motif Atlas

Homologous match to IL_8C3A_481

Geometric discrepancy: 0.0714

The information below is about IL_8C3A_481

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

8OEQ|1|AS|A|1002
8OEQ|1|AS|U|1003
8OEQ|1|AS|U|1004
8OEQ|1|AS|A|1005
*
8OEQ|1|AS|U|1037
8OEQ|1|AS|U|1038
8OEQ|1|AS|C|1039
8OEQ|1|AS|U|1040

Current chains

Chain AS

25S ribosomal RNA

Nearby chains

Chain AT

5S ribosomal RNA; 5S rRNA

Chain AZ

Uncharacterized protein CaJ7.0206

Chain BE

60S ribosomal protein L10