IL_8OEQ_199
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UUAAA*UUAUA
- Length
- 10 nucleotides
- Bulged bases
- 8OEQ|1|AS|U|1327
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OEQ_199 not in the Motif Atlas
- Homologous match to IL_8C3A_051
- Geometric discrepancy: 0.034
- The information below is about IL_8C3A_051
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
8OEQ|1|AS|U|1163
8OEQ|1|AS|U|1164
8OEQ|1|AS|A|1165
8OEQ|1|AS|A|1166
8OEQ|1|AS|A|1167
*
8OEQ|1|AS|U|1324
8OEQ|1|AS|U|1325
8OEQ|1|AS|A|1326
8OEQ|1|AS|U|1327
8OEQ|1|AS|A|1328
Current chains
- Chain AS
- 25S ribosomal RNA
Nearby chains
- Chain AT
- 5S ribosomal RNA; 5S rRNA
- Chain BB
- 60S ribosomal protein L7-A
- Chain BL
- 60S ribosomal protein L18-A
- Chain BZ
- 60S ribosomal protein L32
- Chain CA
- 60S ribosomal protein L33-A
Coloring options: