IL_8OEQ_223
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UUAAC*GGAAGA
- Length
- 11 nucleotides
- Bulged bases
- 8OEQ|1|AS|G|1747
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OEQ_223 not in the Motif Atlas
- Homologous match to IL_8C3A_077
- Geometric discrepancy: 0.0805
- The information below is about IL_8C3A_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_69313.1
- Basepair signature
- cWW-tWH-tHH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
8OEQ|1|AS|U|1690
8OEQ|1|AS|U|1691
8OEQ|1|AS|A|1692
8OEQ|1|AS|A|1693
8OEQ|1|AS|C|1694
*
8OEQ|1|AS|G|1743
8OEQ|1|AS|G|1744
8OEQ|1|AS|A|1745
8OEQ|1|AS|A|1746
8OEQ|1|AS|G|1747
8OEQ|1|AS|A|1748
Current chains
- Chain AS
- 25S ribosomal RNA
Nearby chains
- Chain CB
- 60S ribosomal protein L34-B
- Chain CF
- 60S ribosomal protein L38
Coloring options: