IL_8OEQ_241

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OEQ_241 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.0851

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8OEQ|1|AS|U|2189
8OEQ|1|AS|C|2190
8OEQ|1|AS|A|2191
8OEQ|1|AS|A|2192
8OEQ|1|AS|A|2193
8OEQ|1|AS|G|2194
8OEQ|1|AS|U|2195
*
8OEQ|1|AS|A|2206
8OEQ|1|AS|A|2207
8OEQ|1|AS|C|2208
8OEQ|1|AS|C|2209
8OEQ|1|AS|A|2210
8OEQ|1|AS|A|2211
8OEQ|1|AS|G|2212

Current chains

Chain AS

25S ribosomal RNA

Nearby chains

Chain CD

60S ribosomal protein L36