IL_8OEQ_245

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

8OEQ|1|AS|A|2375, 8OEQ|1|AS|C|2955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OEQ_245 not in the Motif Atlas

Homologous match to IL_8P9A_320

Geometric discrepancy: 0.0562

The information below is about IL_8P9A_320

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80025.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

8

Unit IDs

8OEQ|1|AS|G|2374
8OEQ|1|AS|A|2375
8OEQ|1|AS|A|2376
*
8OEQ|1|AS|U|2953
8OEQ|1|AS|A|2954
8OEQ|1|AS|C|2955
8OEQ|1|AS|C|2956

Current chains

Chain AS

25S ribosomal RNA

Nearby chains

Chain AX

60S ribosomal protein L3

Chain BK

Ribosomal protein L22