IL_8OEQ_258
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GGCU*GAUUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OEQ_258 not in the Motif Atlas
- Homologous match to IL_8C3A_111
- Geometric discrepancy: 0.0438
- The information below is about IL_8C3A_111
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50458.1
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
8OEQ|1|AS|G|2795
8OEQ|1|AS|G|2796
8OEQ|1|AS|C|2797
8OEQ|1|AS|U|2798
*
8OEQ|1|AS|G|2835
8OEQ|1|AS|A|2836
8OEQ|1|AS|U|2837
8OEQ|1|AS|U|2838
8OEQ|1|AS|C|2839
Current chains
- Chain AS
- 25S ribosomal RNA
Nearby chains
- Chain AX
- 60S ribosomal protein L3
- Chain BE
- 60S ribosomal protein L10
- Chain BW
- 60S ribosomal protein L29
Coloring options: