IL_8OEQ_260

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

8OEQ|1|AS|U|2832

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OEQ_260 not in the Motif Atlas

Homologous match to IL_8C3A_113

Geometric discrepancy: 0.085

The information below is about IL_8C3A_113

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

8OEQ|1|AS|G|2800
8OEQ|1|AS|U|2801
8OEQ|1|AS|G|2802
*
8OEQ|1|AS|U|2830
8OEQ|1|AS|U|2831
8OEQ|1|AS|U|2832
8OEQ|1|AS|U|2833
8OEQ|1|AS|U|2834

Current chains

Chain AS

25S ribosomal RNA

Nearby chains

Chain AX

60S ribosomal protein L3

Chain BE

60S ribosomal protein L10