IL_8OEQ_276

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

8OEQ|1|AS|A|3102

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OEQ_276 not in the Motif Atlas

Homologous match to IL_8C3A_129

Geometric discrepancy: 0.0619

The information below is about IL_8C3A_129

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.4

Basepair signature

cWW-tWH-cWW-L-cWW-tHS

Number of instances in this motif group

15

Unit IDs

8OEQ|1|AS|A|3075
8OEQ|1|AS|U|3076
8OEQ|1|AS|U|3077
8OEQ|1|AS|A|3078
8OEQ|1|AS|U|3079
*
8OEQ|1|AS|A|3099
8OEQ|1|AS|G|3100
8OEQ|1|AS|A|3101
8OEQ|1|AS|A|3102
8OEQ|1|AS|U|3103

Current chains

Chain AS

25S ribosomal RNA

Nearby chains

Chain BD

60S ribosomal protein L9-B

Chain BJ

Ribosomal protein L13

Chain CH

60S ribosomal protein L40-B