IL_8OEQ_306

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUUA*UUUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OEQ_306 not in the Motif Atlas

Homologous match to IL_8P9A_380

Geometric discrepancy: 0.0579

The information below is about IL_8P9A_380

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8OEQ|1|B|G|109
8OEQ|1|B|U|110
8OEQ|1|B|U|111
8OEQ|1|B|A|112
*
8OEQ|1|B|U|300
8OEQ|1|B|U|301
8OEQ|1|B|U|302
8OEQ|1|B|C|303

Current chains

Chain B

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S4

Chain K

40S ribosomal protein S8

Chain N

40S ribosomal protein S11A