IL_8OEQ_364

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AAUA*UUCU

Length

8 nucleotides

Bulged bases

8OEQ|1|B|A|1331, 8OEQ|1|B|U|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OEQ_364 not in the Motif Atlas

Homologous match to IL_8C3A_462

Geometric discrepancy: 0.1269

The information below is about IL_8C3A_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25234.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

8OEQ|1|B|A|1330
8OEQ|1|B|A|1331
8OEQ|1|B|U|1332
8OEQ|1|B|A|1333
*
8OEQ|1|B|U|1363
8OEQ|1|B|U|1364
8OEQ|1|B|C|1365
8OEQ|1|B|U|1366

Current chains

Chain B

18S ribosomal RNA

Nearby chains

Chain F

Ribosomal protein S3

Chain S

40S ribosomal protein S16

Chain W

Ribosomal protein S10