IL_8OEQ_365
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GCUGC*GUAUAGUC
- Length
- 13 nucleotides
- Bulged bases
- 8OEQ|1|B|U|1356
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8OEQ_365 not in the Motif Atlas
- Geometric match to IL_8DP3_002
- Geometric discrepancy: 0.3562
- The information below is about IL_8DP3_002
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 17
Unit IDs
8OEQ|1|B|G|1336
8OEQ|1|B|C|1337
8OEQ|1|B|U|1338
8OEQ|1|B|G|1339
8OEQ|1|B|C|1340
*
8OEQ|1|B|G|1353
8OEQ|1|B|U|1354
8OEQ|1|B|A|1355
8OEQ|1|B|U|1356
8OEQ|1|B|A|1357
8OEQ|1|B|G|1358
8OEQ|1|B|U|1359
8OEQ|1|B|C|1360
Current chains
- Chain B
- 18S ribosomal RNA
Nearby chains
- Chain S
- 40S ribosomal protein S16
- Chain V
- 40S ribosomal protein S19-A
- Chain W
- Ribosomal protein S10
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