IL_8OEQ_370

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8OEQ_370 not in the Motif Atlas

Homologous match to IL_8C3A_507

Geometric discrepancy: 0.0874

The information below is about IL_8C3A_507

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.1

Basepair signature

cWW-tSH-L-R-L-R-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8OEQ|1|B|G|1527
8OEQ|1|B|G|1528
8OEQ|1|B|G|1529
8OEQ|1|B|A|1530
8OEQ|1|B|U|1531
8OEQ|1|B|A|1532
*
8OEQ|1|B|U|1553
8OEQ|1|B|U|1554
8OEQ|1|B|C|1555
8OEQ|1|B|A|1556
8OEQ|1|B|A|1557
8OEQ|1|B|C|1558

Current chains

Chain B

18S ribosomal RNA

Nearby chains

Chain U

40S ribosomal protein S18-B

Chain V

40S ribosomal protein S19-A